Features

CLC Genomics Machine is a turnkey solution providing your organization with a wide range of Next Generation Sequencing data analyses.

Some of them are:

Genomics - Transcriptomics - Epigenomics

Genomics

Whole genome re-sequencing and targeted re-sequencing of genomes of any size and type - from bacteria and vira to humans
De novo sequencing of an unlimited number of reads, for genomes up to 50 mega bases
SNP/DIP detection and identification of genomic rearrangements
Visualization and interactive graphical manipulation of results

Transcriptomics

Digital Gene Expression based on RNA-Seq, including a wide range of downstream gene expression analyses
Discovery of novel transcripts/exons
Ability to work with Expression Arrays and RNA-seq results at the same time, enabling comparison of results
Tag Profiling, including SAGE screen analyses
Small RNA analysis
Interactive views of assemblies and derived gene expression data

Epigenomics

Chromatin immunoprecipitation sequencing (ChIP-seq) analysis
Peak finding and peak refinement
Graph and table of background distribution and false discovery rate
Peak table and annotations

Special high-performance computing accelerated algorithms

BLASTn
BLASTp
HMMsearch
HMMpfam
Smith-Waterman
ClustalW